Wednesday, February 13, 2008

botany related link

Botany.com: A complete resource for plant and gardening information, an encyclopedia of plants with detailed descriptions and tips for potting, growing, ...
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Botany - Wikipedia, the free encyclopedia

Botany is the scientific study of plant life. As a branch of biology, it is also called plant science(s), phytology, or plant biology. Botany covers a wide ...
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Careers in Botany - Science Education and Outreach, Botanical ...

Science Careers - Science Education and Outreach, Botanical Society of America.
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Botanical Society of America - Leading Scientists and Educators ...

Botanical Society of America - Leading Plant Scientists and Educators Since 1893, plant science, research, education, outreach.
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World-Wide Web Virtual Library: Botany / Plant Biology (Biosciences)

Collection of scholarly and research links for plant biology.
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Botany Photo of the Day

Thank you to Michael Charters of Calflora.net for contributing today's photograph via the Botany Photo of the Day submissions forum on the garden's site (in ...
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Botany in the Yahoo! Directory

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Internet Directory for Botany

The Page Lists All Pages/Sites Related to Botany: Plant Science, Gardens, Gardening, Forest, Biology, Plant Physiology, Plant Taxonomy, Plant Systematics, ...
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Botany Net

Botany Net. Internet Directory for Botany · List of WWW Sites of Interest to Ecologists(mirror)
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Google Directory - Science > Biology > Botany

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Botany Net

Botany Net. Internet Directory for Botany · List of WWW Sites of Interest to Ecologists(mirror)
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Algae


October 27, 2007

Codium fragile subsp. tomentosoides

Codium fragile subsp. tomentosoides

Thank you to Courtnay H, aka Seaweed Lady@Flickr, for sharing today's photograph (original image via BPotD Flickr Group Pool. If you love the sea and plants (like me), you certainly should view Courtnay's photographs on Flickr.

Courtnay suggests the following link to accompany her photograph: Codium fragile subsp. tomentosoides via Algaebase. If you visit that page, the word “weed” is used (Courtnay calls this photograph “beautiful invader”); indeed, this species is listed in the Global Invasive Species Database, with a comprehensive list of common names: dead man's fingers, green fleece, green sea fingers, oyster thief or Sputnik weed. Originally from Japan, it is now found in many temperate waters worldwide, its dispersal due to “shellfish aquaculture, recreational boating, and transport on ship hulls”.

The common name of oyster thief is due to this alga's tendency to proliferate in shellfish beds, where it can smother the shellfish with its rapid growth and colonial expansion. Sputnik weed is, as you might guess, a fifty year old common name from eastern North America. The introduction of this species to eastern North American waters was first observed around the same time as the launch of the Soviet Union's satellites.

Posted by Daniel Mosquin at 12:00 AM | Comments (2)

September 23, 2007

Pelvetia canaliculata

Pelvetia canaliculata

Botany Photo of the Day will have brief written entries on weekends, holidays and my vacations from April through September. – Daniel

Another nod of appreciation to Stephen B of Scotland aka stephenbuchan@Flickr for sharing today's photograph (original via the BPotD Flickr Pool). Thank you!

Channelled wrack can be found in the high intertidal zone on rocky shores of Atlantic Europe (e.g., in the United Kingdom).

Wikipedia has a tidy summary of Pelvetia canaliculata.

Posted by Daniel Mosquin at 12:00 AM | Comments (5)

July 05, 2007

Unidentified Algae

Unidentified Algae

Botany Photo of the Day will have brief written entries on weekends, holidays and my vacations from April through September. – Daniel

Today's image is courtesy of bbum@Flickr, aka Bill from San Jose, California (original via BPotD Flickr Group Pool). Thank you!

If you'd like a challenge, try identifying this species of alga (I wasn't able to do it with an hour of searching, but then again, I'm not a phycologist!).

Posted by Daniel Mosquin at 12:00 AM | Comments (4)

June 22, 2007

Postelsia palmaeformis

Postelsia palmaeformis

Botany Photo of the Day will have brief written entries on weekends, holidays and my vacations from April through September. – Daniel

Sea palms are one of the few algae covered in-depth on Wikipedia: Postelsia palmaeformis. Like Pelvetiopsis limitata, it is found from the coasts of northern Vancouver Island to the coastal waters of mid-California.

This is the last photograph in the current series on algae. For the definitive photograph of sea palms, see this image of sea palms by Wynn Bullock (one of my all-time favourites).

Posted by Daniel Mosquin at 12:00 AM | Comments (2)

June 21, 2007

Laminaria setchellii

I've mentioned in a previous BPotD entry that the waters of the northeast Pacific contain more species of kelp than anywhere else in the world. Today's photographs illustrate another member of that diverse group, southern stiff-stiped kelp (by the way, there are no search engine results for northern stiff-stiped kelp, so I think stiff-stiped kelp should suffice as a common name). Ecologically, this alga grows from the low intertidal zone on open rocky shores to complete submergence, where it can sometimes be an understory species in kelp forests.

Decew's Guide once again provides some background and references: Laminaria setchellii. The photo gallery at Algaebase provides a more conventional presentation of this species, if you'd like to investigate.

Posted by Daniel Mosquin at 12:00 AM | Comments (6)

June 20, 2007

Ulva intestinalis

Today's photographs and write-up are courtesy of Douglas Justice, UBC Botanical Garden's Curator of Collections. This is the second in a series of at least four BPotD entries on algae.

Ulva intestinalis is pictured here attached to smooth basaltic rock in brackish water on MacKenzie Beach, just north of Pacific Rim National Park. This species is a common feature of tidepools around the world, where it is known variously as sea hair or (more appropriately) gut weed. An annual species, local beaches are littered with their bleached, dried-up stems as temperatures fall in the autumn.

Daniel adds: Note that many references will have this algae under the name Enteromorpha intestinalis (L.) Nees, e.g., DeCew's Guide. For a long time, Enteromorpha was considered a distinct genus from Ulva, based mainly on its tubular growth form. The two genera have now been merged; see Hayden et al. 2003. Linnaeus was right all along: Ulva and Enteromorpha are not distinct genera. (PDF) European Journal of Phycology. 38: 277-294.

Posted by Daniel Mosquin at 06:10 AM | Comments (1)

June 19, 2007

Pelvetiopsis limitata

Pelvetiopsis limitata

I revisited Botanical Beach on the weekend, in what I hope becomes an annual trip for me – it's one of my favourite places in the world. I found it strange that I and my companion were the only ones on the beach on early Saturday morning; I thought the attraction of seeing a zero tide, one of the lowest tides of the year here, would lure more people. More people did visit eventually, but it was perhaps an hour after the zero tide mark before we saw the first few, with numbers gradually increasing after that.

Pelvetiopsis limitata is distributed along the west coast of North America, from northern Vancouver Island to the mid-California coast in San Luis Obispo County. One curious morphological variation that occurs from north to south is an increase in the density of surficial hairs, such that the individuals in California are covered in fine hairs. Jennifer Skene of UC Berkeley is researching the origin, formation and function of these hairs, and whether they might have an impact upon buffering the effects of climate change.

Decew's Guide at the Center for Phycological Documentation contains a guide page about Pelvetiopsis limitata, including journal references associated with each of the facts (very handy). The Multi-Agency Rocky Intertidal Network has more photographs of this species in its factsheet on Pelvetiopsis limitata.

Posted by Daniel Mosquin at 06:03 AM | Comments (6)

October 17, 2006

Trentepohlia aurea (tentative)

Trentepohlia aurea

Another thank you to brettf@Flickr for sharing a macro glimpse of an organism (original image). Also, a thank you to GORGEous nature@Flickr for identifying it, since I didn't know about this organism before today. A second image by Brett can be seen here that gives a more distant perspective. Thank you!

Despite its colour, Trentepohlia is actually a green alga. The chlorophyll pigment is masked by the presence of large amounts of β-carotene, the same photosynthetic pigment that causes the orange colouration of most carrots.

The appearance of Trentepohlia so closely resembles a lichen that it warrants a line in the lichen identification keys for British Columbia – a very astute decision, in my opinion.

Read more about this alga at the University of Paisley's Biodiversity Reference page for Trentepohlia (includes microscopic photographs!).

Posted by Daniel Mosquin at 05:50 AM | Comments (5)

August 15, 2006

Halosaccion glandiforme

Halosaccion glandiforme

I'm glad that a few photographs turned out from my weekend trip to Vancouver Island. Otherwise, I'd be even more cross at the one hour delay for one ferry (on the way there) and the four and a half hour delay on the way back. I didn't get home until 4 AM Monday morning; 4 AM was also the time I started on Sunday to reach Botanical Beach at low tide, the site of today's photograph.

Sea sacs are an algae of the intertidal zone, the area between the high tide mark and the low tide mark. The narrow band of the intertidal requires its inhabitants to have developed a number of strategies or structures to survive in this harsh area; mechanical pounding of the surf, temperature and moisture fluctuations and salinity variability are just a few of the conditions requiring special adaptations.

As noted in this essay on Halosaccion glandiforme, one adaptation of this alga to live in the intertidal is its gross morphology. The short, tubular shape of sea sacs helps to prevent damage from churning water. A second adaptation is the ability of sea sacs to retain water internally in the sac, moderating the extremes of temperature and moisture that would otherwise be experienced by the organism.

More photographs of Halosaccion glandiforme can be seen on California Biota and Seaweeds of Alaska.

Posted by Daniel Mosquin at 12:00 AM | Comments (5)

April 18, 2006

Macrocystis pyrifera and Ardea alba

Macrocystis pyrifera and Ardea alba

Beds of giant kelp (Macrocystis pyrifera) provide a floating platform for the piscivorous (fish-eating) great egret in the marine waters of California's Point Lobos State Reserve. What you see from above the water as tangled mats of seaweed are the uppermost fronds of organisms which may reach heights of 60m (read more on Macrocystis pyrifera). In favourable areas, dense, underwater kelp forests form; these support a wide diversity of other organisms. For an excellent summary article on the biology of kelp forest ecosystems, see Steneck, R. et al. 2002. Kelp Forest Ecosystems: Biodiversity, Stability, Resilience and Future. Environmental Conservation. 29:436-459.

Kelps, or the Order Laminariales, are most diverse in the coastal waters of the temperate northeastern Pacific Ocean, with twenty species occurring from Alaska to Baja California.

Botany resource link: Plant for the Planet: A Plant Conservation Checklist for Gardeners (PDF file), a small brochure on gardening with plant conservation in mind from Botanic Gardens Conservation International – Canada.

Posted by Daniel Mosquin at 12:00 AM | Comments (3)

August 11, 2005

Fucus gardneri

Fucus gardneri

A strong contender for the plant (note: see comments below - not actually a plant, but a stramenopile) with the “most common” common name, common rockweed is a brown alga typically found in the intertidal zone of rocky shorelines. It is abundant throughout the temperate waters of the Pacific Northeast, from California to Alaska.

For more information about this plant stramenopile, see Fucus gardneri on the Center for Phycological Documentation site for a wide array of references.


Algae are a large and diverse group of simple plant-like organisms, ranging from unicellular to multicellular forms. The largest and most complex marine ...
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Green algae - Wikipedia, the free encyclopedia

The green algae (singular: green alga) are the large group of algae from which the embryophytes (higher plants) emerged. As such, they form a paraphyletic ...
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Algae Research/ Department of Botany, National Museum of Natural ...

Algae are photosynthetic organisms that occur in most habitats. They vary from small, single-celled forms to complex multicellular forms, such as the giant ...
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The world of algae

Some people treat algae as a subkingdom under the Whittaker 5-kingdom system of classification. This violates all the principles of modern systematics, ...
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ALGAE

Many of the larger algae are accepted as plants by most people but the absence of highly differentiated cells distinguishes them from the kingdom Plantae ...
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Introduction to the Green Algae

The "green algae" is the most diverse group of algae, with more than 7000 species growing in a variety of habitats. The "green algae" is a paraphyletic ...
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UNH Biodiesel Group

Michael Briggs describes how much biodiesel would be needed to replace all petroleum transportation fuels in the United States and how algae could be used ...
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Harmful Algae : Red Tide

Info on toxic algal blooms. Algae species, photos, adverse impacts and human illness. US distribution maps of hazardous algal blooms (HAB).
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The Algae Programming Language

a high-level interpreted language for numerical analysis.
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Algae: Protists with Chloroplasts

The algae are a polyphyletic and paraphyletic group of organisms. They are defined in differing ways, but are usually considered to be the photosynthetic ...
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News results for algae


Toxic algae closes lake to swimmers - 14 hours ago
A toxic algae infestation has prompted a health warning for Lake Tutira, north of Napier. Hawke's Bay District Health Board said exposure to the blue-green ...
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Tuesday, February 12, 2008

pteridology

The pteridophytes are vascular plants (plants with xylem and phloem) that neither flower nor produce seeds. Instead, they reproduce and disperse only via spores.

Pteridophyte classification

The pteridophytes do not form a monophyletic group but consist of several groups, the Lycopodiophyta (club mosses, spike mosses, and quillworts), the Equisetophyta (horsetails), the Psilotophyta (whisk ferns), the Ophioglossophyta (adder's tongues and grape ferns), and the Pteridophyta (true ferns).

In addition to these living groups of pteridophytes are several groups now extinct and known only from fossils. These groups include the Rhyniophyta, Zosterophyllophyta, Trimerophytophyta, and the progymnosperms.

Modern studies of the land plants agree that all the pteridophytes share a single common ancestor. However, they are not a clade (monophyletic group) because the seed plants are also descended from within this group -- probably close relatives of the progymnosperms.

Pteridophyte sexuality

These plants are generally sporophyte-oriented; that is, the normal plant is the diploid sporophyte, with the only haploid structure being the gametophyte (prothallium) in season. This basic pattern is like that found in the seed plants but with an important exception. Unlike the seed plants, the pteridophytes have a gametophyte stage that is free-living. As a result, pteridophyte sexuality is more complicated than that of the seed plants. There are several basic categories of sexuality in pteridophytes. The terms distinguish between types of gametophyte sexuality:

  • Dioicous pteridophytes produce only antheridia (male organs) or archegonia (female organ) on a single gametophyte body.
  • Monoicous pteridophytes produce both antheridia and archegonia on the same gametophyte body.
    Protandrous pteridophytes produce the male antheridia first, and then their female argchegonia.
    Protogynous pteridophytes produce the archegonia first, followed by the antheridia.

Notice that these terms are not the same as monoecious and dioecious, which refer to whether or not a sporophyte plant bears one or both kinds of gametophyte. Those terms apply only to seed plants.

See also

References

  • Gifford, Ernest M. & Foster, Adriance S. (1988). Morphology and Evolution of Vascular Plants, (3rd ed.). New York: W. H. Freeman and Company. ISBN 0-7167-1946-0.
  • Raven, Peter H., Evert, Ray F., & Eichhorn, Susan E. (2005). Biology of Plants (7th ed.). New York: W. H. Freeman and Company. ISBN 0-7167-1007-2.


bryology

bryology is the branch of botany concerned with the scientific study of bryophytes (mosses, liverworts, and hornworts).

related topic

bryophyta
pteridiphyta
angiosperm
gymnosperm
algae
fungi
cell

Botany study

Classification

Linnaeus's classification system greatly influenced eighteenth-century botany in America. Some of his students came over to categorize the species of the New World, most significantly Pehr Kalm, who traveled through the Great Lakes, the Mid-Atlantic colonies, and Canada, bringing back samples. Meanwhile, colonial settlers like John Bartram (1699–1777), Cadwallader Colden (1688–1776), Humphry Marshall (1722–1801), and others worked to incorporate the local flora into the work of Linnaeus, which provided a new sense of order for those working on studying the plants and animals of the overwhelmingly diverse and novel New World.

But although the Linnaean system was helpful, it could not survive the strain of the thousands of new discoveries in the Americas and Asia. Plant classifications based on reproduction resulted in categories that contained obviously widely diverging plants. In particular, Linnaeus was challenged by French botanists who emphasized grouping plants by shape (morphology). Antoine Laurent de Jussieu's (1748–1836) 1789 Genera Plantarum prompted the reorganizing of classification by appearance and added levels to the taxonomy.

The Jussieu modifications quickly, but not uncontroversially, became added to botanical literature, although the Linnaean system continued to be used in many prominent American publications through the early nineteenth century. Meanwhile, French botanists made other contributions to the study of North American plants. André Michaux (1746–1802) and his son, François André (1770–1855), traveled through much of eastern North America, from Canada to the Bahamas, observing and collecting. The end result of their massive researches was the 1803 Flora Boreali-Americana, the first large-scale compilation of North American plants. The work of the Michaux drew, not uncritically, on the reforms of Jussieu.


Botany
For other meanings, see Botany (disambiguation)
Pinguicula grandiflora commonly known as a Butterwort
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Pinguicula grandiflora commonly known as a Butterwort
Example of a cross section of a stem [1]
Enlarge
Example of a cross section of a stem [1]

Botany is the scientific study of plant life. As a branch of biology, it is also called plant science(s), phytology, or plant biology. Botany covers a wide range of scientific disciplines that study plants, algae, and fungi including: structure, growth, reproduction, metabolism, development, diseases, and chemical properties and evolutionary relationships between the different groups. The study of plants and botany began with tribal lore, used to identify edible, medicinal and poisonous plants, making botany one of the oldest sciences. From this ancient interest in plants, the scope of botany has increased to include the study of over 550,000 kinds or species of living organisms.

Scope and importance of botany

As with other life forms in biology, plant life can be studied from different perspectives, from the molecular, genetic and biochemical level through organelles, cells, tissues, organs, individuals, plant populations, and communities of plants. At each of these levels a botanist might be concerned with the classification (taxonomy), structure (anatomy and morphology), or function (physiology) of plant life.

Historically, botany covers all organisms that were not considered to be animals. Some of these "plant-like" organisms include fungi (studied in mycology), bacteria and viruses (studied in microbiology), and algae (studied in phycology). Most algae, fungi, and microbes are no longer considered to be in the plant kingdom. However, attention is still given to them by botanists, and bacteria, fungi, and algae are usually covered in introductory botany courses.

The study of plants has importance for a number of reasons. Plants are a fundamental part of life on Earth. They generate the oxygen, food, fibres, fuel and medicine that allow higher life forms to exist. Plants also absorb carbon dioxide through photosynthesis, a minor greenhouse gas that in large amounts can effect global climate. It is believed that the evolution of plants has changed the global atmosphere of the earth early in the earth's history and paleobotanists study ancient plants in the fossil record. A good understanding of plants is crucial to the future of human societies as it allows us to:

  • Produce food to feed an expanding population
  • Understand fundamental life processes
  • Produce medicine and materials to treat diseases and other ailments
  • Understand environmental changes more clearly

Human nutrition

Nearly all the food we eat comes (directly and indirectly) from plants like this American long grain rice.
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Nearly all the food we eat comes (directly and indirectly) from plants like this American long grain rice.

Virtually all foods eaten come from plants, either directly from staple foods and other fruit and vegetables, or indirectly through livestock or other animals, which rely on plants for their nutrition. Plants are the fundamental base of nearly all food chains because they use the energy from the sun and nutrients from the soil and atmosphere and convert them into a form that can be consumed and utilized by animals, this is what ecologists call the first trophic level. Botanists also study how plants produce food we can eat and how to increase yields and therefore their work is important in mankind's ability to feed the world and provide food security for future generations, for example through plant breeding. Botanists also study weeds, plants which are considered to be a nuisance in a particular location. Weeds are a considerable problem in agriculture, and botany provides some of the basic science used to understand how to minimize 'weed' impact in agriculture and native ecosystems. Ethnobotany is the study of the relationships between plants and people.

Gregor Mendel laid the foundations of modern genetics from his studies of plants.
Gregor Mendel laid the foundations of modern genetics from his studies of plants.

Fundamental life processes

Plants are convenient organisms in which fundamental life processes (like cell division and protein synthesis for example) can be studied, without the ethical dilemmas of studying animals or humans. The genetic laws of inheritance were discovered in this way by Gregor Mendel, who was studying the way pea shape is inherited. What Mendel learned from studying plants has had far reaching benefits outside of botany. Additionally, Barbara McClintock discovered 'jumping genes' by studying maize. These are a few examples that demonstrate how botanical research has an ongoing relevance to the understanding of fundamental biological processes.

Medicine and materials

Many medicinal and recreational drugs, like cannabis, caffeine, and nicotine come directly from the plant kingdom. Others are simple derivatives of botanical natural products; for example aspirin is based on the pain killer salicylic acid which originally came from the bark of willow trees.[2] There may be many novel cures for diseases provided by plants, waiting to be discovered. Popular stimulants like coffee, chocolate, tobacco, and tea also come from plants. Most alcoholic beverages come from fermenting plants such as barley malt and grapes.

Plants also provide us with many natural materials, such as cotton, wood, paper, linen, vegetable oils, some types of rope, and rubber. The production of silk would not be possible without the cultivation of the mulberry plant. Sugarcane, rapeseed, soy and other plants with a highly-fermentable sugar or oil content have recently been put to use as sources of biofuels, which are important alternatives to fossil fuels, see biodiesel.


Modern botany

A considerable amount of new knowledge today is being generated from studying model plants like Arabidopsis thaliana. This weedy species in the mustard family was one of the first plants to have its genome sequenced. The sequencing of the rice (Oryza sativa) genome and a large international research community have made rice the de facto cereal/grass/monocot model. Another grass species, Brachypodium distachyon is also emerging as an experimental model for understanding the genetic, cellular and molecular biology of temperate grasses. Other commercially-important staple foods like wheat, maize, barley, rye, pearl millet and soybean are also having their genomes sequenced. Some of these are challenging to sequence because they have more than two haploid (n) sets of chromosomes, a condition known as polyploidy, common in the plant kingdom. Chlamydomonas reinhardtii (a single-celled, green alga) is another plant model organism that has been extensively studied and provided important insights into cell biology.

In 1998 the Angiosperm Phylogeny Group published a phylogeny of flowering plants based on an analysis of DNA sequences from most families of flowering plants. As a result of this work, major questions such as which families represent the earliest branches in the genealogy of angiosperms are now understood. Investigating how plant species are related to each other allows botanists to better understand the process of evolution in plants.

Subdisciplines of Botany

See also

Crantz's Classis cruciformium..., 1769
Enlarge
Crantz's Classis cruciformium..., 1769